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Originally Posted by headsup7up

throw out bearing is what contacts the pressure plate from the clutch fork. when they go bad they just make noise. unless it was installed wrong or its the wrong one for the car, i think there just jerking you around. if you didnt have it replaced, then it wasnt touched during the new clutch install so unless it was doing the shift issue before the clutch was replaced then thats most likely not your problem.

Well Spec provided a throw out bearing with the kit, so from what I'm hearing it was installed or positioned incorrectly.